PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237174.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 823aa    MW: 90805.9 Da    PI: 5.0174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237174.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047370393123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+++F  k+++ +H+ + H
  XP_008237174.1 370 FECHKCSMTFGEKDSYLQHLLSfH 393
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.890.105.7E-4241294IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.62E-6244295IPR016177DNA-binding domain
SMARTSM003550.27370393IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767370398IPR007087Zinc finger, C2H2
PROSITE patternPS000280372393IPR007087Zinc finger, C2H2
SMARTSM003550.2417439IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829417444IPR007087Zinc finger, C2H2
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MATVDSLTHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ  60
TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD  120
QIDFEAAHTA SFPVLLGPNH ELRSGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG  180
MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI  240
VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSFFGFNN  300
ARQPDGRGGE NLQEECIMTT ENHSDKDGGR RQYVNSSSAL VVSTISNEHE KEVSLSGMEN  360
LAEVQIHDLF ECHKCSMTFG EKDSYLQHLL SFHQRTTRRY RLGSTVGDGV IIKDGKYECQ  420
FCHKVFLERR RYNGHVGIHV RNYVRRVEES PGPTTVQKRI ESPSGEGFPS RISKMDALIE  480
IAQNSILETS TAGPNNESKC GPAANSHQEM NIDSPLSEPD LEGSMIDRTA SDQHDSEHTI  540
TDGSMEEADD PMEVVDVKMD SGMNTTSIEK NGKPSESSLE KDGLVFTTDE LEKSGTNQDG  600
ASQCLIHASS NDKIISEVVG NENLNFTSTL EHPNAVELSN NKNSEPAVEL GSSNDHGPAD  660
DTLIEPVRQA NEENEIQSGI SDSSISLVQP LVCFPTSNAI SDKGEQHVSS VGQRHNHETG  720
FEELRLDEIE PLKYGFAGGQ ESLTMQEVPM DLTNNAEMER AFGSSVQFEQ EEVMLSMAAS  780
HQLTCVWCGV EFNHEAADSE IQADSVGFMC PACKAKISGP LNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237174.10.0PREDICTED: uncharacterized protein LOC103335917 isoform X2
TrEMBLA0A251MU380.0A0A251MU38_PRUPE; Uncharacterized protein
STRINGXP_008237173.10.0(Prunus mume)