PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237242.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 362aa    MW: 39815.3 Da    PI: 4.5779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237242.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15196232135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_008237242.1 196 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 232
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.2E-86297IPR010399Tify domain
PROSITE profilePS5132012.8776297IPR010399Tify domain
PfamPF062005.8E-106596IPR010399Tify domain
PfamPF062031.9E-14130171IPR010402CCT domain
PROSITE profilePS5101712.789130172IPR010402CCT domain
SMARTSM004012.5E-12190243IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11194246No hitNo description
CDDcd002021.96E-14195238No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15195237IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-13196232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440196223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEMVNAQLLQ ARAYEGEDQL VHIPAELEGD YDEGGGAKAA MNGGDQARRS SGVTMSRCNS  60
ALPSRTSELT IAFEGEVHVF PAVTPDKVQA VLLLLGGRDM SSIFPSSESL LESNSGGIGD  120
ISRNSKLSRR TASLVRFREK RKERCFEKKI RYTCRKEVAQ RMYRKNGQFA SLKDNSKIAS  180
GNCDSSDGTS CPESVCQHCG ISEKSTPAMR RGPAGPRSLC NACGLMWANK GTLRDLTKAG  240
RPIHFDQNEL ETAADFKPLM LKPENAQLDP DEEGSPEESK PIALDTENPL LRLGDEDMLE  300
TAEAATNHIS IQMENSTVNF DEQENLDEFC NASGTEFEIP ANFDEQVVDF YDCNIETHWP  360
GT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237242.10.0PREDICTED: GATA transcription factor 19-like isoform X2
SwissprotQ8GXL76e-59GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A251MUF10.0A0A251MUF1_PRUPE; Uncharacterized protein
STRINGXP_008237241.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-51ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]