PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237243.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 358aa    MW: 39391.9 Da    PI: 4.7048
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237243.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15199235135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_008237243.1 199 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 235
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.2E-86297IPR010399Tify domain
PROSITE profilePS5132012.8776297IPR010399Tify domain
PfamPF062005.7E-106596IPR010399Tify domain
PROSITE profilePS5101712.789130172IPR010402CCT domain
PfamPF062031.9E-14130171IPR010402CCT domain
SMARTSM004011.8E-12193246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14197240IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.43E-11197249No hitNo description
CDDcd002022.97E-14198241No hitNo description
PfamPF003202.2E-13199235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEMVNAQLLQ ARAYEGEDQL VHIPAELEGD YDEGGGAKAA MNGGDQARRS SGVTMSRCNS  60
ALPSRTSELT IAFEGEVHVF PAVTPDKVQA VLLLLGGRDM SSIFPSSESL LESNSGGIGD  120
ISRNSKLSRR TASLVRFREK RKERCFEKKI RYTCRKEVAQ RMYRKNGQFA SLKDNSKIAS  180
GNCDSSDGTS CPESVLRRCQ HCGISEKSTP AMRRGPAGPR SLCNACGLMW ANKGTLRDLT  240
KAGRPIHFDQ NELETAADFK PLMLKPENAQ LDPDEEGSPE ESKPIALDTE NPLLRLGDED  300
MLETAEAATN HISIQMENST VNFDEQENLD EFCNASGTEF EIPANFDEQF YEYNPTGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237243.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237243.10.0PREDICTED: GATA transcription factor 19-like isoform X3
SwissprotQ5Z4U59e-58GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A251MUF90.0A0A251MUF9_PRUPE; Uncharacterized protein
STRINGXP_008237241.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-49ZIM-like 1