PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237244.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 295aa    MW: 31443 Da    PI: 5.4412
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237244.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99e-16203239135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  XP_008237244.1 203 CMHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 239
                     99***99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.9E-1365100IPR010399Tify domain
PROSITE profilePS5132015.06865100IPR010399Tify domain
PfamPF062001.7E-126899IPR010399Tify domain
PfamPF062033.0E-16132174IPR010402CCT domain
PROSITE profilePS5101713.245132174IPR010402CCT domain
SMARTSM004013.8E-10197252IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-10200246No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13201239IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.04E-12202239No hitNo description
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13203239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSESNHQNSM YGSGGGAPQS NQVEEQEDDV EESIDNPHIR FEDSSAIPPN PLYLTSSEYP  60
PPAATNGGSD QLTLSFQGEV YVFDEVSPDK VQAVLLLLGG YEIPSGIPSM GPVPLNQQGM  120
NDLPVKPIQP QRAASLSRFR EKRKERCFDK KIRYTVRKEV ALRMQRKKGQ FTSSKASSDD  180
GGPASSGATQ GSGQDESMQE TSCMHCGISS KSTPMMRRGP AGPRTLCNAC GLKWANKGVL  240
TGGPKVSNIG MQDPSAKGIE QGNGEAKDSV AITMGANIAP SSNGDNSAMT VDRNL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237244.10.0PREDICTED: GATA transcription factor 28-like isoform X1
SwissprotQ8H1G02e-73GAT28_ARATH; GATA transcription factor 28
TrEMBLM5VKR30.0M5VKR3_PRUPE; Uncharacterized protein
STRINGXP_008237244.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-69ZIM-LIKE 2