PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237245.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 267aa    MW: 28569.6 Da    PI: 5.8121
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237245.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.8e-16175211135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  XP_008237245.1 175 CMHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 211
                     99***99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.89965100IPR010399Tify domain
PfamPF062001.1E-76890IPR010399Tify domain
PROSITE profilePS5101713.245104146IPR010402CCT domain
PfamPF062032.6E-16104146IPR010402CCT domain
SMARTSM004013.8E-10169224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-10172218No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13173211IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.61E-12174211No hitNo description
PfamPF003201.6E-13175211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSESNHQNSM YGSGGGAPQS NQVEEQEDDV EESIDNPHIR FEDSSAIPPN PLYLTSSEYP  60
PPAATNGGSD QLTLSFQGEV YVFDEVSPDK GMNDLPVKPI QPQRAASLSR FREKRKERCF  120
DKKIRYTVRK EVALRMQRKK GQFTSSKASS DDGGPASSGA TQGSGQDESM QETSCMHCGI  180
SSKSTPMMRR GPAGPRTLCN ACGLKWANKG VLTGGPKVSN IGMQDPSAKG IEQGNGEAKD  240
SVAITMGANI APSSNGDNSA MTVDRNL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237245.10.0PREDICTED: GATA transcription factor 25-like isoform X2
SwissprotQ9LRH62e-59GAT25_ARATH; GATA transcription factor 25
TrEMBLM5VLF80.0M5VLF8_PRUPE; Uncharacterized protein
STRINGXP_008237244.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-55GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]