PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237298.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 468aa    MW: 53229.8 Da    PI: 7.1723
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237298.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.92.5e-91834641373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  ++ ++ ++ts    +ee+ a++ ++ vsP+++f+h
  XP_008237298.1  83 LIHMLLITATAVNENNVSSALENLSELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFFDMITKEPTS----EEEFVAFTSLYRVSPYYQFAH 173
                     6899***************************************************999999888777775....78889999************* PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI ea+e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s +el+et++rL +f + + ++ fef+ l 
  XP_008237298.1 174 FTANQAIIEAFEKEeeknnRALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGQ----SLDELRETENRLMSFSKGFrNLIFEFQGL- 263
                     ************9977777788**********************99755566*********....9****************97579******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l   +l +Lr k++E++aVnlv++l +l  + +++++     Lk+v  l+P +v++veqe +++  sFl rf+e+l+y++a+fdsl+  lp 
  XP_008237298.1 264 ---LRGSKLINLRKKRNETIAVNLVFHLNTLS-NGLKISD----SLKAVHLLNPSIVILVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPL 350
                     ...66667789*****************9997.5555555....9************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk......sdg.........yrveee.s 355
                     es er ++E+  lg+ei++++   +++    + e++e+W++r+e+ GF+ ++ls+k   qa+lll+         +dg         ++v e+ +
  XP_008237298.1 351 ESAERLSIEKNHLGKEIKSMLNYDNDDvNCSKIEKMETWKARMESHGFEGINLSSKSKIQARLLLKIRThycplqFDGessggstagFKVFERdD 445
                     ***********************9999788999*******************************9743310101122222222222255544345 PP

            GRAS 356 gslv.lgWkdrpLvsvSaW 373
                     g  + lgW+dr L++vSaW
  XP_008237298.1 446 GRTIsLGWQDRYLLTVSAW 464
                     55556************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.48457428IPR005202Transcription factor GRAS
PfamPF035148.8E-8983464IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEDIDEEELL NLSLAIVTTS GGERVKKRKR RDHKNVLVSP LNSYEGCEGK IFRLLQMREQ  60
MLKLDHKKKG AHVLDEDGKG LHLIHMLLIT ATAVNENNVS SALENLSELY KSVSLCGDSV  120
QRVVAYFADG LAARLLTRKS PFFDMITKEP TSEEEFVAFT SLYRVSPYYQ FAHFTANQAI  180
IEAFEKEEEK NNRALHVIDF DVSYGFQWPS LIQSLSEKAT SGNRISLRIT GFGQSLDELR  240
ETENRLMSFS KGFRNLIFEF QGLLRGSKLI NLRKKRNETI AVNLVFHLNT LSNGLKISDS  300
LKAVHLLNPS IVILVEQEGS RSPRSFLSRF MESLHYFAAM FDSLDDCLPL ESAERLSIEK  360
NHLGKEIKSM LNYDNDDVNC SKIEKMETWK ARMESHGFEG INLSSKSKIQ ARLLLKIRTH  420
YCPLQFDGES SGGSTAGFKV FERDDGRTIS LGWQDRYLLT VSAWNCVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-549146527379Protein SCARECROW
5b3h_A2e-549146526378Protein SCARECROW
5b3h_D2e-549146526378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530KKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237298.10.0PREDICTED: scarecrow-like protein 23
TrEMBLM5VGL50.0M5VGL5_PRUPE; Uncharacterized protein
STRINGXP_008237298.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-52RGA-like 2