PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237336.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18867.8 Da    PI: 9.802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237336.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-221057249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie +s r+vtfskRr g++KKA+EL+++C++eva+iifs  gk + +
  XP_008237336.1 10 LIETESARHVTFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 57
                    5999************************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.535161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-25173IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-28160IPR002100Transcription factor, MADS-box
CDDcd001203.27E-25260No hitNo description
PRINTSPR004042.0E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRKKTRMEL IETESARHVT FSKRRSGLFK KASELCTMCA VEVAIIIFSI GGKAFSFGHP  60
NVHSVFNRLR FSENPDASTS SNDVAGQDPI LHDLNKTHSD LIEDVGLVKK LGKKMRRAIM  120
EKPKPDWFYA PRESLSMEVL YEMKKALEDV QENVRRDKER LLEQA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237336.11e-120PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A314YUF01e-113A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61
STRINGXP_008237336.11e-120(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2040945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-34AGAMOUS-like 61