PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237582.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 591aa    MW: 66570.5 Da    PI: 6.6406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237582.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix911.2e-2866150187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+lea
  XP_008237582.1  66 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 150
                     8********************************************************************96..45557******985 PP
2trihelix100.11.9e-31413497186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev aLi++r+ ++ r++++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qle
  XP_008237582.1 413 RWPRVEVEALINLRTCLDVRYQEAGPKGSLWEEISAGMRQLGYNRSAKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFNQLE 497
                     8********************************************************************97.99***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00163125IPR001005SANT/Myb domain
PfamPF138371.0E-1865150No hitNo description
CDDcd122031.10E-2365130No hitNo description
PROSITE profilePS500906.81865123IPR017877Myb-like domain
SMARTSM007170.0072410472IPR001005SANT/Myb domain
PfamPF138372.7E-21412498No hitNo description
CDDcd122031.59E-27413477No hitNo description
PROSITE profilePS500906.957413470IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MPAVDVPAPD SSSTMLAAGS SSGEGLAGVV REGSHETTAV LSNSVQEDKD GRVDDLGDRN  60
LYGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGELGYYR SAKKCKEKFE  120
NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDQQNNHPSV PPKPQVLLWP NNNHHHPNNP  180
TVVSHGITSV VPLSSTPNMM ATTNGSLNGS HISPPPINSL PPQVTKPVNL SHQNLNGFKP  240
SLATSNLFSS STSSTASDEE FQVQQSGKKK RKWKYFFRRL TKEVLEKQEK LQEKFLEAIA  300
KCEHQRTVRE EAWRMQEMAR LDKEHQILAQ ERSSAAAKDA AVIEFLQKVS GQQNVTNNIQ  360
AIEVNRPIPS RPQPLPVLMA PPPPAPVAVI TTSFEVPRLD KGDNSTIPPG STRWPRVEVE  420
ALINLRTCLD VRYQEAGPKG SLWEEISAGM RQLGYNRSAK RCKEKWENIN KYFKKVKESS  480
KTRPEDSKTC PYFNQLEDLY RKKNMNNSSH VGYVEKPLPQ AILQPLIKVQ PDQPVVEAIE  540
GENGDKNEED EDGESTEEED HHLDQSNDDD QDEQMGIVTN YKESSMEMVE S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237582.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-135TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM5VKC50.0M5VKC5_PRUPE; Uncharacterized protein
STRINGXP_008237582.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-117Trihelix family protein