PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237585.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 445aa    MW: 51387.1 Da    PI: 6.5442
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237585.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12.1e-27120216185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+q+v++Li+a+++++e+ ++++           +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d
  XP_008237585.1 120 KWTDQMVKLLITAVSYIGEDASSDCgsggrrkystlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENQALLD 214
                     7*********************99888899999999**********************************************6699999988877 PP

        trihelix  84 ql 85 
                      +
  XP_008237585.1 215 VI 216
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-24118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGHLSQGGM VPGGASYGGL DLEGSMRVQH QTQHPHTIHQ HHPHPRQGSL AHPSIHEGFP  60
LKMGTMHTCD QTISMMDYNK GERSKNSASD EDEPSYTEDG TDGHAEGNRG KKGSPWQRVK  120
WTDQMVKLLI TAVSYIGEDA SSDCGSGGRR KYSTLQKKGK WKSVSKVMAE RGFHVSPQQC  180
EDKFNDLNKR YKKLNDMLGR GTSCQVVENQ ALLDVIDYLT EKEKDDVRKI LSSKHLFYEE  240
MCSYHNGNRL HLPHDPALQK SLQRALRRDE HDNDDPRRHH HDDLDEDDQD METDEHEDFE  300
ENNASHGDNR GIYVLEDSVK RLRQGQGREE FNYGSSLNPQ DCNKSSYCHP PIPQADMNQV  360
LPDGTKAAWL QKQWIESRSL QLEEQKLQIQ VEMLELEKQH FKWQRFSKKR DRELEKLRME  420
NERMKLENER MALELKRKEM GAGFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237585.10.0PREDICTED: uncharacterized protein LOC103336322
TrEMBLM5VYL50.0M5VYL5_PRUPE; Uncharacterized protein
STRINGXP_008237585.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-170sequence-specific DNA binding transcription factors