PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237631.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 323aa MW: 35843.9 Da PI: 4.7453

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237631.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.6	1.2e-37	34	88	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ XP_008237631.1 34 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 88 58***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	16	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	34	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-32	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MFSAPVEQML QCPSGPFIMM DKRSWNKPHI EVAPNCPRCA SSNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK AAKLSQADRA SLSCFNHNSS SSDDTSGQYS 120 SGTDNQPGGG NGSDIDLAAV FAKFLNNNSS NPADEHDHLD QDHEPNLVIS SSELNDVDGS 180 QNSSRADQDL VEAVDHLLGG LVAPDHHDHH DHQHQQIQEE NVQSFMGINH EQQDDMNIHE 240 FGLQGLLGND DQVVQDVFWS DDAATTSSLT SSTASFSWQP MVHLQELDYS LPSDDDHMKI 300 PTNLCSDNWS SFDFSGFEVF SRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237631.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237631.1	0.0	PREDICTED: dof zinc finger protein DOF3.5
TrEMBL	M5VKJ5	0.0	M5VKJ5_PRUPE; Uncharacterized protein
STRING	XP_008237631.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-40	Dof family protein