PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237708.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 546aa    MW: 60985.6 Da    PI: 4.7122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237708.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.74.6e-1381775462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA a+s+g+ + a++++++l++++s +gdp qR+aay++e+Laar+a+s++ +y++l+++e +   ss +laa+++++ev+P++kf+++
  XP_008237708.1 177 KQLLYNCAGALSEGNIKGASTMISELRQMVSIQGDPAQRIAAYMVEGLAARVASSGKFIYRSLKCKEPP---SSYRLAAMQVLFEVCPCFKFGFM 268
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea + e++vHiiDfdi+qG Q++ L+q+La+R ++pp+lR+Tgv++pes+      l+ +g+rL+k+Ae+l+vpfef++ va+r++ +
  XP_008237708.1 269 AANGAIIEACKDEKMVHIIDFDINQGNQYIKLIQTLANRLGKPPHLRLTGVDDPESVqrPVGGLNIIGQRLEKLAEALKVPFEFQA-VASRTSIV 362
                     *******************************************************99888899***********************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a lpr+s++r++
  XP_008237708.1 363 NTSMLDCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFFPRFIEAYNYYSAVFDSLDAALPRDSQDRMN 457
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l+r + ++ y+v+ee g+l +gW++++L+++SaWr
  XP_008237708.1 458 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSITDSIRELIRPYCDR-YKVKEEAGALHFGWENKSLIVASAWR 546
                     ************************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.402150527IPR005202Transcription factor GRAS
PfamPF035141.6E-135177546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSLVRPAELS ATSYRNPKLY SPKGSNDSST LSTQTFSSDK HKTLYVADPY SAESYEYFLD  60
SPVEEIANPS SSGISGNSTN PQDYFESQSP DADSFDEDKM RLKLQELERA LLEDNDDEND  120
EEINCSSQSM EVDGEWTDPI QNELLHDSPK ESSSSESNVS SISSNKEISQ ASPQTPKQLL  180
YNCAGALSEG NIKGASTMIS ELRQMVSIQG DPAQRIAAYM VEGLAARVAS SGKFIYRSLK  240
CKEPPSSYRL AAMQVLFEVC PCFKFGFMAA NGAIIEACKD EKMVHIIDFD INQGNQYIKL  300
IQTLANRLGK PPHLRLTGVD DPESVQRPVG GLNIIGQRLE KLAEALKVPF EFQAVASRTS  360
IVNTSMLDCR PGEALLVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLRPK LVTVVEQDVN  420
TNTTPFFPRF IEAYNYYSAV FDSLDAALPR DSQDRMNVER QCLARDIVNI VACEGEERIE  480
RYEVAGKWRA RMTMAGFTSC PMSTSITDSI RELIRPYCDR YKVKEEAGAL HFGWENKSLI  540
VASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6518254525378Protein SCARECROW
5b3h_A2e-6518254524377Protein SCARECROW
5b3h_D2e-6518254524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237708.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A251MUR10.0A0A251MUR1_PRUPE; Uncharacterized protein
STRINGXP_008237707.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]