PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237820.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 378aa    MW: 42941.7 Da    PI: 7.703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237820.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.3e-5391381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk +
  XP_008237820.1   9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 102
                     69****************************.99**************963433332556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  XP_008237820.1 103 RN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138
                     *9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-598161IPR003441NAC domain
PROSITE profilePS5100557.7669161IPR003441NAC domain
PfamPF023657.5E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MANSSTGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMEV IREVDLNKME PWELQERCRI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNTFKKIG MRKTLVFYRG  120
RAPHGQKTDW IMHEYRLEDG EDPQGNLSSE DGWVICRVFK KKNLFKVGNE GGSSSMNSSD  180
RQQLNNTSST NHARSFMHTH RDNEYLLRQQ HSQAFELNNP SLHYAHLQPP PQYSLFQPQA  240
LISTHKPIAG YDYTPLPSDD SPGHGMVKQL MTNPRDCESG SESLRYQACE PGLEVGTCEP  300
NQAPMVAGGG GRDHHDQGGM NEWAMLDRLV TSHLGNDQDS SSKGARYDQD ANAAASSVTQ  360
INNHLSLRGE MDFWGYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51916317167NO APICAL MERISTEM PROTEIN
1ut4_B3e-51916317167NO APICAL MERISTEM PROTEIN
1ut7_A3e-51916317167NO APICAL MERISTEM PROTEIN
1ut7_B3e-51916317167NO APICAL MERISTEM PROTEIN
3swm_A4e-51916320170NAC domain-containing protein 19
3swm_B4e-51916320170NAC domain-containing protein 19
3swm_C4e-51916320170NAC domain-containing protein 19
3swm_D4e-51916320170NAC domain-containing protein 19
3swp_A4e-51916320170NAC domain-containing protein 19
3swp_B4e-51916320170NAC domain-containing protein 19
3swp_C4e-51916320170NAC domain-containing protein 19
3swp_D4e-51916320170NAC domain-containing protein 19
4dul_A3e-51916317167NAC domain-containing protein 19
4dul_B3e-51916317167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237820.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-154BRN2_ARATH; Protein BEARSKIN2
TrEMBLM5VLK30.0M5VLK3_PRUPE; Uncharacterized protein
STRINGXP_008237820.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-148NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]