PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237971.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 219aa MW: 25270.3 Da PI: 5.1414

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237971.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.5e-21	101	161	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ XP_008237971.1 101 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 161 89***************99************************************97 PP
2	Wus_type_Homeobox	100.9	9.1e-33	100	163	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_008237971.1 100 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 163 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-17	95	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.317	97	162	IPR001356	Homeobox domain
SMART	SM00389	9.9E-13	99	166	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-17	100	164	IPR009057	Homeodomain-like
CDD	cd00086	3.33E-13	101	163	No hit	No description
Pfam	PF00046	1.1E-18	101	161	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MMEWQQQQQQ QQIQNQQQII HHLQNPEDGI GNGNGGLYVK VMTDEQMELL RRQIAVYATI 60 CEQLVEMHKA VTAQQDLSGM RLGNFYCDPF MASGGHKITA RQRWTPTPVQ LQMLERIFEE 120 GTGTPCKQKI KEITMELTQH GQISETNVYN WFQNRRARSK RKQSVPAQNN GESEAEPEVE 180 SPRDEKTKPE DIMSLDNSAP RAENMYLQSP ELGFGNFDW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237971.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237971.1	1e-165	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A314UFW2	1e-148	A0A314UFW2_PRUYE; WUSCHEL-related homeobox 8 isoform X2
TrEMBL	M5WVH2	1e-148	M5WVH2_PRUPE; Uncharacterized protein
STRING	XP_008237971.1	1e-164	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-75	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]