PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237985.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 911aa MW: 101689 Da PI: 6.475

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237985.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+le+l+kyFs+++kdAA+++gvc T+LKriCRq+GIkRWP+Rkik++ XP_008237985.1 592 AEKAITLEVLRKYFSGSLKDAANSIGVCSTTLKRICRQHGIKRWPSRKIKKV 643 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.791	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	8.1E-25	596	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.01E-24	808	901	No hit	No description
PROSITE profile	PS51745	27.902	815	898	IPR000270	PB1 domain
SMART	SM00666	9.3E-26	815	898	IPR000270	PB1 domain
Pfam	PF00564	1.3E-19	816	896	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.2E-23	817	895	No hit	No description
CDD	cd06407	4.91E-43	817	896	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MDDDVLSPAT MMGAQPDSTT DLDFMDELFL EGCWLETTDG PEFPNQSHAN SGAHLNSSVF 60 WHTLEANGNL TMNPSENSNQ EVIQTPFFKQ LHEGPVNPQF PSQNMIDVDG YSGHSADPTI 120 KSYELNRRWW IGPLGNQGPA SSVMERLTRA LVCIRDVMRD KNVLVQVWVP VNKGGRNVLT 180 TNDDLFSLDS SCPRLSKYRD ISVNYQFSTG EDSTELVKGL PGRVFSGQVP EWTPDVRFFR 240 SDEYPRVDYA QRYDVRGTLA LPIFEQGSST CLGVIEVVTT TQKIKYQLEL ESVCKALEAV 300 DLQSSRNWST QNVKGCVKPY QAALPEIREV LRSACETHKL PLAQTWVSCI QQGKDGCRHS 360 DDNYVHCVST VDHAFHVTDP YIEGFHEACS EHHLLKGQGI VGKAFMTNQP CFSDDITSCV 420 KTEYPLSHHA RMFGLHAAVA IRLRSMKTGS TDFVLEFFLP VECRDPEEQK KMLNSLSIII 480 QQICRSLRVV TDKELEEESD FPVSEMIVSS DPRPSGIASF TEVQLSGNDV SIFPMENPRE 540 VLGVKSSKLR QHQPDSNLKV GVKCGRECSA LGEGSFSSVG VSKTREKRRT RAEKAITLEV 600 LRKYFSGSLK DAANSIGVCS TTLKRICRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVEGA 660 SGAFQINSFY TNFPELTSPN LSGTSPFSTS KLSDQPKPTN LSPEGGVVSP QATASKSPSS 720 SCSQSSSSSQ CCSSRTQQHR PTCNVTGDDD PIVGDNSGDG VLKRVRSEAE LHAFGQDRTQ 780 LLPRSQSHKI LNELQKLQPI PPSLKNNGVA QEREVRRVKV AYGDEKTRFR MQNDWRYEDL 840 VQEIAKRFSI EDMSKFYIKY LDDDSEWVLL TCDADLEECI DVCRSSQSNT IKLSLHLSRH 900 HLERFIGTGG P

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MDDDVLSPAT MMGAQPDSTT DLDFMDELFL EGCWLETTDG PEFPNQSHAN SGAHLNSSVF  60
WHTLEANGNL TMNPSENSNQ EVIQTPFFKQ LHEGPVNPQF PSQNMIDVDG YSGHSADPTI  120
KSYELNRRWW IGPLGNQGPA SSVMERLTRA LVCIRDVMRD KNVLVQVWVP VNKGGRNVLT  180
TNDDLFSLDS SCPRLSKYRD ISVNYQFSTG EDSTELVKGL PGRVFSGQVP EWTPDVRFFR  240
SDEYPRVDYA QRYDVRGTLA LPIFEQGSST CLGVIEVVTT TQKIKYQLEL ESVCKALEAV  300
DLQSSRNWST QNVKGCVKPY QAALPEIREV LRSACETHKL PLAQTWVSCI QQGKDGCRHS  360
DDNYVHCVST VDHAFHVTDP YIEGFHEACS EHHLLKGQGI VGKAFMTNQP CFSDDITSCV  420
KTEYPLSHHA RMFGLHAAVA IRLRSMKTGS TDFVLEFFLP VECRDPEEQK KMLNSLSIII  480
QQICRSLRVV TDKELEEESD FPVSEMIVSS DPRPSGIASF TEVQLSGNDV SIFPMENPRE  540
VLGVKSSKLR QHQPDSNLKV GVKCGRECSA LGEGSFSSVG VSKTREKRRT RAEKAITLEV  600
LRKYFSGSLK DAANSIGVCS TTLKRICRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVEGA  660
SGAFQINSFY TNFPELTSPN LSGTSPFSTS KLSDQPKPTN LSPEGGVVSP QATASKSPSS  720
SCSQSSSSSQ CCSSRTQQHR PTCNVTGDDD PIVGDNSGDG VLKRVRSEAE LHAFGQDRTQ  780
LLPRSQSHKI LNELQKLQPI PPSLKNNGVA QEREVRRVKV AYGDEKTRFR MQNDWRYEDL  840
VQEIAKRFSI EDMSKFYIKY LDDDSEWVLL TCDADLEECI DVCRSSQSNT IKLSLHLSRH  900
HLERFIGTGG P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237985.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237985.1	0.0	PREDICTED: protein NLP4-like isoform X2
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	M5WEH0	0.0	M5WEH0_PRUPE; Uncharacterized protein
STRING	XP_008237985.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein