PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238136.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 244aa MW: 26709.9 Da PI: 8.6647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238136.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.5e-31	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_008238136.2 2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelal 96 ++e++l XP_008238136.2 97 AVETVL 102 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.004	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTGARV PXEAPDADGG 120 GVNNCTDMWR LRDPSHNSGS SSRFTSSRSA RASSPKRKRS ADDESSTKVL QLQHHADLDL 180 RLTPSLTFKP KPKPETRRAG TPSMNSEESV VTTCFESGLP DNHHQYNQHY YGVGAERKLL 240 NLFP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238136.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238136.2	0.0	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-79	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314XUB9	1e-161	A0A314XUB9_PRUYE; LOB domain-containing protein 38
STRING	XP_008238136.1	1e-159	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-75	LOB domain-containing protein 38