PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238183.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 93030.3 Da    PI: 5.4166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238183.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-2198153156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_008238183.1  98 KKRYHRHTAHQIQEMENLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 153
                     688999***********************************************998 PP
2START161.18.1e-513005272206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     la +  +elvk+  a+ep+W + s    e +n +e+++ f++              +++ea r+s+vv+m++ +lv  +ld + +W e ++    
  XP_008238183.1 300 LAASSVDELVKMCHAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFPsivs 391
                     6788899*****************666666666666666655..15699999**999**************************.*********** PP

                     EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
           START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                     +a+t++vi+ +      g lqlm+aelq+lsplvp R+  f+Ry++q  ++g w+ivd  +ds  ++  +ss+ R ++lpSg+li++++ng+sk+
  XP_008238183.1 392 RAKTVQVIQADpsgqanGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQDMPNGYSKI 485
                     ***********************************************999****************98.9************************* PP

                     EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     twveh++ +++ +h++l + v sg+a+ga++w+a lqrqce+
  XP_008238183.1 486 TWVEHAEIEEKPVHQILSHYVYSGMAFGAQRWLAILQRQCER 527
                     ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-2087156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2193160IPR009057Homeodomain-like
PROSITE profilePS5007117.13595155IPR001356Homeobox domain
SMARTSM003895.6E-2096159IPR001356Homeobox domain
CDDcd000863.68E-1998156No hitNo description
PfamPF000462.1E-1898153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084845.358290530IPR002913START domain
SuperFamilySSF559615.36E-34291529No hitNo description
CDDcd088752.66E-117294526No hitNo description
SMARTSM002344.2E-35299527IPR002913START domain
PfamPF018524.5E-43300527IPR002913START domain
SuperFamilySSF559618.93E-14562724No hitNo description
SuperFamilySSF559618.93E-14760798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MLEAKMYGDC QVMSTMGGGN VVTSETLFSS PIQNPNFNFM PSQLPFQPFS SIINPKEENG  60
LLMRGKEEMM ESGSGSEQVE EKSGNEQEAD QLQQPPKKKR YHRHTAHQIQ EMENLFKECP  120
HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRSD NVMLRAENDS LKNENYRLQT  180
ALRNIICPNC GGPSMIADIG LDEQQLRLEN ARLREELERV CCLSSRYTTE RQIQTMAPGD  240
PLMSASSLDL DMNIYSRHFQ DPMTSCGDMI PMPLLPPEVP SHYNEGGVLL DEEKTLAVEL  300
AASSVDELVK MCHAGEPLWI RNSEIGKEVL NVKEYTRMFP PWPLNLKHHS SDQFRTEATR  360
DSAVVIMNSI NLVDCFLDAN KWMELFPSIV SRAKTVQVIQ ADPSGQANGS LQLMYAELQV  420
LSPLVPTREA HFLRYCQQNA EEGCWAIVDF PIDSFHDNLQ SSFPRYKRLP SGCLIQDMPN  480
GYSKITWVEH AEIEEKPVHQ ILSHYVYSGM AFGAQRWLAI LQRQCERVAS LMARNISDLG  540
VIPSPEARKN LMKLSQRMIR TFCVNMSTSN GQSWTALSDS PDDTVRITTR KVTDPGQPIG  600
VILSAVSTTW LPYSHFRVFE LLRDEHRRAQ QLDVLSNGNS LHEVAHIANG SHPGNCISLL  660
RINVASNSAQ NVELMLQESC TDESGSLVVY TTMDVDGIQL AMSGEDPSCI PLLPLGFVIV  720
PLHPMESTCP TPNHLTSSSP DHRQEDSTAT TTTTSNVINS GCLLTVGLQV LASTSPSAKL  780
NLSSVTAINN HLCNSVQQII SALSSSSDTC IAAATTENGS VGGGASCSDP TASSPRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238183.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLM5WW920.0M5WW92_PRUPE; Uncharacterized protein
STRINGXP_008238183.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]