PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238226.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 314aa    MW: 34987 Da    PI: 8.7807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238226.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13116167155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e +k+L+
  XP_008238226.1 116 QRMTHIAVERNRRKQMNEHLAILRSLMPDS---YVQRGDQASIVGGAIELVKELE 167
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-12114171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-11114171No hitNo description
SuperFamilySSF474599.81E-16114185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTMALEALTS NEPFNFIIYD TISATPYSFQ DSSGTTSNFI PPDKYFCTST SSMKSDQDTQ  60
IKRALNLEAA AAGGGGKQKQ SSLGVNNNNA QQQQQGRKKR RRKPRVCKNK EEAETQRMTH  120
IAVERNRRKQ MNEHLAILRS LMPDSYVQRG DQASIVGGAI ELVKELEHLL HSVEAQKLQL  180
LHNADVSTST SKVVQTPFTQ LLECPQYTWS HCPNKFTSKT KAAIADIEVT LIETHANLKI  240
MSRRISPRQL SKLVGGIQSL QLTILHLTVT TMDPYVLYSI SVKIEEGCLL SSVDDIATAI  300
HHMLRVIEEA ATLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RKKRRRK
296103RKKRRRKP
397102KKRRRK
4116127RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238226.10.0PREDICTED: transcription factor bHLH71
SwissprotQ9C7T41e-69BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK919e-70BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A314YER10.0A0A314YER1_PRUYE; Transcription factor bHLH71
STRINGXP_008238226.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]