PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238267.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 240aa    MW: 26096.9 Da    PI: 5.2447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238267.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_008238267.1 74 YTCTFCRREFRSAQALGGHMNVH 96
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-671101No hitNo description
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15774101IPR007087Zinc finger, C2H2
PfamPF139121.8E-57497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAELGLLSLT ELQKLALSQQ NQNQSQLLNP SLPPKAWMWN PKPAQEPEDD SWEVRAFAED  60
TGNVMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQSNPPI NPASASSAST  120
SSFIIPTQEF VNANGGLCLV YQLPSPSSIN GASFNTATTL MSSSSHGVEQ SPSTLLSISP  180
NIPPHDYLAS VVPPGTNSQY CHSSKSADDP EPSTPETENG NFEELDLELR LGHGRPTVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136996229superman protein
2l1o_A2e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238267.11e-177PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM5WCI01e-164M5WCI0_PRUPE; Uncharacterized protein
STRINGXP_008238267.11e-177(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-41C2H2 family protein