PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238478.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

RAV

Protein Properties

Length: 292aa MW: 34133.5 Da PI: 7.9718

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238478.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.6	1.7e-09	21	67	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s++kGV+ k +g W A+I + k ++lg + +eeAa a+++a+ kl XP_008238478.1 21 SRFKGVSLLK-SGNWGARISYmY------KPYWLGAYQMEEEAAIAYDRAAVKL 67 789***99.7**87733......********************988 PP
2	B3	67.1	2.6e-21	140	234	1	86
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt+ dv+ ++ + +p++f ++ +++++ ++lt++d++grsW++ ++y+++ + +++t+GW +F + n+L+++D+v+F++ XP_008238478.1 140 FQKELTHRDVTHKC-FLIPREFSFRYlsppegiinaVEDEARCVKLTFYDKHGRSWTFGYSYWQSTRNFMFTNGWGHFIRMNNLNQKDIVMFYRC 233 99********99.9**999999999999985667799************************************************54 PP S CS B3 86 g 86 + XP_008238478.1 234 E 234 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.0E-4	21	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-13	21	79	IPR016177	DNA-binding domain
CDD	cd00018	3.86E-13	21	79	No hit	No description
SMART	SM00380	3.3E-8	22	83	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-11	22	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.63	22	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	5.1E-23	132	246	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-20	137	235	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.98E-20	138	238	No hit	No description
PROSITE profile	PS50863	10.912	139	253	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-18	140	234	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-12	140	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEAEFVSESR VDIVLQRGPS SRFKGVSLLK SGNWGARISY MYKPYWLGAY QMEEEAAIAY 60 DRAAVKLQRG DTPLNFHWSK YSAEESIFQS QYSTEEILSM LKDKTYSSKL MNFLSRHSSG 120 LGTRTTTFMN EQGISYHFLF QKELTHRDVT HKCFLIPREF SFRYLSPPEG IINAVEDEAR 180 CVKLTFYDKH GRSWTFGYSY WQSTRNFMFT NGWGHFIRMN NLNQKDIVMF YRCEYEGEVL 240 GREVYMIDYQ RSNGQNYVLE HSSGSSTIEL EADCKQKETK KGFKLFGVEI NG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238478.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBL	A0A314UZ17	0.0	A0A314UZ17_PRUYE; AP2/ERF and B3 domain-containing transcription factor
STRING	XP_008238478.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16118	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	2e-46	RAV family protein