PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238706.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 292aa MW: 33624.3 Da PI: 9.6007

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238706.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.1	4e-20	42	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA + F +r +++ k+++ei +++fvC k+g +++++ +++ +r +r++Ckak++v k++ ++k+ ++ + + HnH+++ XP_008238706.1 42 NFYNRYAFLADFGIRLHSNFWGKNKKEILRKEFVCCKQGAYGKDETR--ERKGQRGISRCNCKAKIVVVKTNgSKKYTISLFAEGHNHKIT 130 6*************************************9998877..88999********9999998*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-17	42	131	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-9	251	289	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSGGSESDDC VTANGRVHIP EVRNEETPAV GMQFDSLDIV YNFYNRYAFL ADFGIRLHSN 60 FWGKNKKEIL RKEFVCCKQG AYGKDETRER KGQRGISRCN CKAKIVVVKT NGSKKYTISL 120 FAEGHNHKIT PSERMHLLRS HRRISDSTKV LTRQLGLVNI PINQKVSIFE VQSRGMDKIG 180 FIKKDIYNLE CSVNGKLRNN DVELVTEYFM AEQKNKMRLF ISRLREIDNR FSRCFWAEAT 240 SRRAYGFYGD VVVFDTTFNT NRYDLTFAPM LGVNNHSQTI VLACAFFEQG ND

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253548	0.0	AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238706.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008238706.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-41	FAR1-related sequence 5