PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238755.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 483aa    MW: 54336 Da    PI: 7.565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238755.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11308354455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_008238755.1 308 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 354
                     699***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3722212IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.02E-13302358No hitNo description
SuperFamilySSF474593.27E-16302368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15308366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWVYSI FWQPSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVTNNHQ PKFGFNKKVT SIEAEEALLD EDMVDLEMRL VDHGDVTGSE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPYGVL ELASLDVIKE DWGFVHLSKS LFVSDNDNNN RVSQQNGSRK GNVLAPLLEN  240
RIFSGSQKKL TRQAGTKEAA PFNIGGSSPE SLSGSVGNFT CENTENTRSK KRSRSSNNGA  300
SRESSLLNHV EAERQRREKL NHRFYLLRSV VPNVSKMDRS SLLADAVAYI NQLKAKVEEL  360
ELKTQAQPQN PQRVSVNNLD NQCSQSTNSI VDHHSSYNNT KVVPVEVDVK IMGSEAIIRV  420
QCPDQDYPYA RLMNALKGLG LQVYHASISS VKELMIQDVV ARMPYGFTSE EAMRIGIIKR  480
WHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-23152123192Transcription factor MYC3
4rqw_B4e-23152123192Transcription factor MYC3
4rs9_A4e-23152123192Transcription factor MYC3
4yz6_A4e-23152123192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238755.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238755.10.0PREDICTED: transcription factor bHLH14-like isoform X2
TrEMBLA0A314UTS30.0A0A314UTS3_PRUYE; Transcription factor bHLH14-like isoform X1
STRINGXP_008238754.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-57bHLH family protein