PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238801.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 222aa MW: 24134.3 Da PI: 6.9477

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238801.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	52	100	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+G+r ++ g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+ XP_008238801.2 52 SRYHGIR-CR-GGKWVSEIREPRK---TRRIWLGTYPTPEMAAAAYDVAALALK 100 78**9.55.7*****843...5********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.41E-14	52	111	No hit	No description
SuperFamily	SSF54171	2.75E-17	52	111	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-9	52	100	IPR001471	AP2/ERF domain
SMART	SM00380	5.5E-24	53	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.137	53	109	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-24	53	110	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MNREKAPPST TPFYTKPSHI LLSLSSPPEL VQLLKHPPLP TTMASSSCGK HSRYHGIRCR 60 GGKWVSEIRE PRKTRRIWLG TYPTPEMAAA AYDVAALALK RGDAVLNFPS SIASYPVPAS 120 TSPEDIRSAA AAAAAAALQW NEEANNSLKQ RESQKKQEND MRMMMNSSSL ASSVGIDEEE 180 LFGMPNLLTE MAEGMLLSPP RPPDYPDSSG NSDGGESGLW SF

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238801.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238801.2	1e-163	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	1e-41	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	M5WDQ5	1e-107	M5WDQ5_PRUPE; Uncharacterized protein
STRING	XP_008238801.1	1e-129	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	2e-35	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]