PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238808.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 332aa    MW: 36055.8 Da    PI: 4.537
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238808.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36321232102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++liswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll++
  XP_008238808.1  32 FLTKTYQLVDDPSVDDLISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKGLLRE 117
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_008238808.1 118 IQRRKI 123
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-6028121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.0E-3529121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3829121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-213255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-217082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-218395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASLQADQNG DSGPVNGAGG GGDSQRTLPT PFLTKTYQLV DDPSVDDLIS WSEDGSAFIV  60
WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFKRG EKGLLREIQR  120
RKISPSVSAS PAAITATLAT VSAVAPGVSP SNSGDEQVIS SNSSPVAPPA TMLSRIRSCT  180
TTSDVLEENE RLRKENMQLS HELTQLRGLC NNILALMTNY ASGQLEGGGG GGGGGSVMDE  240
GKPLELSPVK EAEPSENGVV REGSKAEASA EEEEDEEEMR PRLFGVSIGV KRVRRDEEEE  300
EQHREGSEAM KSEPSDGSSK RDQDSTWLEL GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-273212620125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221235SGQLEGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238807.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_008238808.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D37e-97HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLM5W9Z40.0M5W9Z4_PRUPE; Uncharacterized protein
STRINGXP_008238806.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-89HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]