PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238820.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 430aa    MW: 48014.2 Da    PI: 9.0948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238820.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-1758102348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eEd+ll ++v+++ + +Wk Ia++++ gRt+ qc  rwqk+l
   XP_008238820.1  58 CWTEEEDDLLGELVRKFNKSNWKEIASCLP-GRTDVQCLQRWQKVL 102
                      6*****************************.************986 PP
2Myb_DNA-binding59.38.6e-19108154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ +++ v+ +G ++W+ Ia+ ++ gR +kqc++rw+++l
   XP_008238820.1 108 KGPWTKEEDDCIIKQVESHGAKRWSVIAKFLP-GRMGKQCRERWYNHL 154
                      79******************************.*************97 PP
3Myb_DNA-binding44.63.3e-14160202145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r++WT+eE+  l  +++++G++ W+ Iar ++ gRt++ +k++w+
   XP_008238820.1 160 RNAWTEEEEWVLTYYHQLFGNK-WAEIARFLP-GRTDNGIKNHWN 202
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.97550102IPR017930Myb domain
SMARTSM007178.0E-1555104IPR001005SANT/Myb domain
PfamPF002491.1E-1458102IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1658112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2359109IPR009057Homeodomain-like
CDDcd001671.47E-1359102No hitNo description
PROSITE profilePS5129429.133103158IPR017930Myb domain
SuperFamilySSF466893.07E-30105201IPR009057Homeodomain-like
SMARTSM007173.4E-16107156IPR001005SANT/Myb domain
PfamPF002495.5E-18108154IPR001005SANT/Myb domain
CDDcd001671.15E-15110154No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24110154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-19155209IPR009057Homeodomain-like
SMARTSM007173.3E-12159207IPR001005SANT/Myb domain
PROSITE profilePS5129416.685159209IPR017930Myb domain
PfamPF002493.6E-11160202IPR001005SANT/Myb domain
CDDcd001675.86E-9162205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAKVKKEKLQ EVVVDPYEKM GFLLQALYET EGCFDSPASK PSSATRRATG PMRRSAKCWT  60
EEEDDLLGEL VRKFNKSNWK EIASCLPGRT DVQCLQRWQK VLNPEIVKGP WTKEEDDCII  120
KQVESHGAKR WSVIAKFLPG RMGKQCRERW YNHLCPAINR NAWTEEEEWV LTYYHQLFGN  180
KWAEIARFLP GRTDNGIKNH WNCTLKRKLD SYSPNGCDVD MHPYVWNGEL RSGHVEINPA  240
GQISDRLASL NQRTGLEIGD SACSTKLTLG CSYRHELCSE WKPVKVQKCR SSDRGANSLT  300
NLITSGSSKH SPLSASSLVF VGASTSTRSS PHESPSCYST PQSRAQNVNV NLSSGSSPGS  360
RLKNLALSFK NTPSIIRKRS SRRPDASSAA VKSLGRCLER EFDAENHSGV TKCGQLFSAY  420
ATSSDVNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-66592099159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-66592099159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238820.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A251P5X50.0A0A251P5X5_PRUPE; Uncharacterized protein
STRINGXP_008238820.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-76myb domain protein 3r-4