PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239157.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 681aa    MW: 75404.9 Da    PI: 6.7247
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239157.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24116216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF +    
  XP_008239157.1 116 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GG 206
                     99****************************9543..445569************************************************4..37 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_008239157.1 207 NGELRVGVRR 216
                     8899****98 PP
2Auxin_resp103.23.2e-34242321183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d+++ +W++SkWrsLk
  XP_008239157.1 242 ATHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISS-HWSHSKWRSLK 321
                     689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-40104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40110231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-20114216No hitNo description
PfamPF023628.9E-22116216IPR003340B3 DNA binding domain
SMARTSM010191.9E-23116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351116218IPR003340B3 DNA binding domain
PfamPF065076.2E-32242321IPR010525Auxin response factor
PfamPF023099.3E-7560609IPR033389AUX/IAA domain
SuperFamilySSF542771.13E-13569649No hitNo description
PROSITE profilePS5174525.474573654IPR000270PB1 domain
PfamPF023095.5E-6620657IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN  60
LPSKILCRVL NINLMAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL  120
TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TATHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN  360
KRPRPAAEIP AVDATSSTAP ALWNSGLTQS HDMSPPSVAT EGKRSENHAL WHHQQADVIS  420
NNNCISRTQT DGGWLSQTGG SKLMFQDAMD DTKIFSACPV FSGYSTPNSS KLKNDSMCDH  480
VENGKKTETA TSCRIFGIEF INHSARSPSM EKTPLQPINA STGTTEGRVS YSLAAESDQK  540
SDVSKACKEC KPGQLQVSSK ETQTKQSCST STRSRTKVQM QGMAVGRAVD LTILEGYDQL  600
IDELEEMFDI KGQIHPGNLW QIVFTDNEGD MMLMGDDPWA EFCDMVKRIF ICSSQDVKKI  660
SAGCKLPSSS LEVEGTVTSS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1741234422355Auxin response factor 1
4ldw_A1e-1741234422355Auxin response factor 1
4ldw_B1e-1741234422355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239157.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2L1GH110.0A0A2L1GH11_9ROSA; Auxin response factor
STRINGXP_008239157.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9