PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239252.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 484aa    MW: 54161.6 Da    PI: 7.2184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239252.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-31104208199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_008239252.1 104 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGElGK 198
                     89***************************966778999*************************************************77789999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_008239252.1 199 DRLFIDWRRR 208
                     9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4198212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29101208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-26102191No hitNo description
SMARTSM010193.1E-22104209IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649104209IPR003340B3 DNA binding domain
PfamPF023624.8E-29104208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNFGSAARDG GFSTEDENNI VRGKLPFSYA SSPSSSTSSA QYNKTTSIAT LVPSAHYNRA  60
AYDDGPDTKL ELMDSSPRDR DNNEEDDGSR REENPIAIER EHMFDKVVTP SDVGKLNRLV  120
IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK  180
LDAGDIVSFQ RGLGELGKDR LFIDWRRRPD APDPIHHHHH HPHPLHPHHH HYQPNFAIAH  240
QQQQQHFSWN HHQRSVPWSP LLMRPPSGGG LAPRDHLQHL SQQINYSMNM HHPYRNTGTS  300
STAGGGSGGS SYGYGNVVSS SGPIYYLRSA SSAAPHEYEG SGSGLQQLQQ QQQQQQQQQV  360
QLLGRVHEPN MVLESVPVVH GKAAAKRLRL FGVNMDCPIS ESDHECDILS SSSSQYHHAT  420
MASPSHQLSP SSQPPLQLRL FDGTPLHSTT TTTTTSASTT TDFLSIRGEH QASSPFSMSL  480
DFDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-66992093114B3 domain-containing transcription factor NGA1
5os9_B5e-66992093114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239252.10.0PREDICTED: B3 domain-containing protein Os02g0683500-like
RefseqXP_016651434.10.0PREDICTED: B3 domain-containing protein Os02g0683500-like
TrEMBLM5WWQ70.0M5WWQ7_PRUPE; Uncharacterized protein
STRINGXP_008239252.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-68B3 family protein