PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239263.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 517aa    MW: 56694.3 Da    PI: 8.1367
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239263.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.36.4e-24198242145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e+
  XP_008239263.1 198 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKPVES 242
                     79****************************************986 PP
2QLQ52.41.6e-18137170235
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                     +FT+aQ ++L++Q ++y+y+++++PvPp+Ll++i
  XP_008239263.1 137 PFTPAQREELERQTMIYRYMMSSAPVPPHLLVPI 170
                     8********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-10136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.905137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.5E-13137170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.077198242IPR014977WRC domain
PfamPF088791.1E-19199241IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGKRNGFVVA SEKGTAEETT ECCDIGLGLM MQKTHQSFPR KKMMMMMPHH HDHHEQPLLS  60
SGGSFGGEGC GVFEHSASGP LFCNTSNPVT SCISDIYNAV GSDFGSVVPK SLQQPYSDHS  120
LSFSPSGGMV NVNMRLPFTP AQREELERQT MIYRYMMSSA PVPPHLLVPI AKNPSNVAHL  180
YPNLVRGSLE LGFSSNSDPE PWRCKRTDGK KWRCSRDVAP DQKYCERHAH KSRPRSRKPV  240
ESNPNFINNN TTTTTTRMRS PRSNFVKNNN SNQPTPFSTN MVSPTVPSHA QPRSMGWFMK  300
GETPTAPTAG GSNQGWEQMT QFKLGLKSCY TKCNTDVDVS KQQNESSFNL YREYTGESQG  360
LQTQRPSHDQ YGLLLSPKLA HLEGALNSNQ TQETRHFIDA RSTTTERDSS IGEIGNRGYV  420
SSNQKLPFSS LTLSMSRGNE TNEETDNTQM GLGILGSERE NVGDLKSQWM NPLSCMSSPP  480
GGPLAEALCL GIASSTRATS SNGCISGSTS SGDGVYT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239263.10.0PREDICTED: growth-regulating factor 8
TrEMBLA0A314YWK80.0A0A314YWK8_PRUYE; Uncharacterized protein
STRINGXP_008239263.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.19e-50growth-regulating factor 8