PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239287.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 793aa    MW: 86295.5 Da    PI: 5.1
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239287.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.91.8e-30103187187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  XP_008239287.1 103 RWPRQETLALLKIRSEMDVSFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 187
                     8*********************************************************************866665..******985 PP
2trihelix107.11.2e-33502587187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  XP_008239287.1 502 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 587
                     8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002100162IPR001005SANT/Myb domain
PfamPF138371.1E-21102188No hitNo description
CDDcd122033.72E-27102167No hitNo description
PROSITE profilePS500906.76102160IPR017877Myb-like domain
PROSITE profilePS500906.922495559IPR017877Myb-like domain
SMARTSM007170.0024499561IPR001005SANT/Myb domain
PfamPF138375.2E-23501588No hitNo description
CDDcd122038.57E-30501566No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MQQGAGGAQT HYGVGAAEDM GAAAAAAGPS SSSMAAAAAE AGDQAQLVEA ASPISSRPPA  60
SASVNLDELM TLSGAAAAAE DALAASRDEA DRGGGGVGSS GNRWPRQETL ALLKIRSEMD  120
VSFRDATLKG PLWEDVSRKL AELGYKRSAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYK  180
FFSELEALHG TTAATSSVNV SASPAVHVTH ASPNPVSIGF SNPMPISSFR MSPTIPVMPS  240
QQPPATFPVM PSSQPPPTAA TTATHPMDIN FSSNSSSSSL GTDDEDDDDD VEGEPSSRKR  300
KRGGASTSSG GSGSTRKMME FFEVLMKQVM QKQETMQQRF LEVIEKREQD RTIREEAWKR  360
QEMARLTREH ELMSQERAIS ASRDAAIISF LQKITGQTIQ LPPPVNVHAA PPPPVPPSVP  420
VVTPLAQQSV QPPIQTSYHQ TTPQQQQPPQ QQHVQQVRHH QQQSQNLQVV MAVPEQQVQP  480
PQENIASGGG AGGSLEPASS SRWPKAEVLA LIKLRSGLES RYQEAGPKGP LWEEISAGMG  540
RMGYKRSSKR CKEKWENINK YFKKVKESNK KRPEDAKTCP YFHELDALYR KRILGGGGGG  600
GSSSSLGNQN RLEQPQQQQL QLENPKSDSA TQPQDRSLEA QPSAPVMPQT QEAVVATDQS  660
ENKNGDHSAN VETSNVGSRA NLFEEATDEA AKKPEDIVKE LMQQQQQQVH DHLQQGVQQL  720
AVDDYDRIEE ADSDNIMDQE EDMEDDDIDE EDDEEMEEER KMAYKIEFQK QNTTGPSSNG  780
GGNGAASFLA MVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239287.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBLM5WE170.0M5WE17_PRUPE; Uncharacterized protein
STRINGXP_008239287.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-49Trihelix family protein