PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239342.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family S1Fa-like
Protein Properties Length: 83aa    MW: 9043.79 Da    PI: 10.5229
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239342.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA127.44.1e-401783470
            S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    + + akG+nPGlivllvv gll++flvgny+lyvyaq+++PP+kkkPvskkklkre+lkqGv++PGe
  XP_008239342.1 17 GVAAAKGFNPGLIVLLVVVGLLVIFLVGNYALYVYAQRTVPPKKKKPVSKKKLKRERLKQGVSAPGE 83
                    66789*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046899.5E-382083IPR006779DNA binding protein S1FA
ProDomPD0190130.0062283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MADEFEFADK VPPSFDGVAA AKGFNPGLIV LLVVVGLLVI FLVGNYALYV YAQRTVPPKK  60
KKPVSKKKLK RERLKQGVSA PGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207530.14e-52DNA-binding protein S1FA
RefseqXP_008239342.14e-52PREDICTED: DNA-binding protein S1FA-like
RefseqXP_021806782.14e-52DNA-binding protein S1FA-like
SwissprotP425538e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A314ZQY69e-51A0A314ZQY6_PRUYE; DNA-binding protein S1FA
TrEMBLM5W4V19e-51M5W4V1_PRUPE; Uncharacterized protein
STRINGXP_008239342.12e-51(Prunus mume)
STRINGEMJ087292e-51(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355