PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239410.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 238aa MW: 27597.1 Da PI: 7.0042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239410.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	110	133	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H XP_008239410.1 110 WQCGYCKKSFRAEKFLDQHFDNrH 133 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	112	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKNTSLFIPI LLLLSFSLQQ TVQVSSFTQR NQEFEKSASS RTLEQEHEHA HEVHCSRERS 60 RAAWKIIEEY LMPFLEQEHY EMSSKCRLHP DNDLFRDQEQ HKIHLDINEW QCGYCKKSFR 120 AEKFLDQHFD NRHYNLLNIS GSKCLADLCR ALHCDVVMDT KLSKTKCNPA AAARNHHLCE 180 GLADSCFPIN QGPSARRLNE AIKCILSGYF HTDFDAASYF LSDSLFAPKR DENGNPRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239410.1	1e-179	PREDICTED: uncharacterized protein LOC103338010 isoform X2
TrEMBL	A0A251P922	1e-165	A0A251P922_PRUPE; Uncharacterized protein
STRING	XP_008239409.1	1e-147	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	3e-83	C2H2-like zinc finger protein