PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239493.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23219.5 Da    PI: 10.5005
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239493.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+ii+s++gk+y ++s
  XP_008239493.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIILSPSGKIYQFAS 59
                    79***********************************************86 PP
2K-box63.57.7e-229317617100
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++e + L++ i+nL r +++l Ge+L+ L ++eL+qLe+qL++++++iRs+  +++ e+i+ l++k k+lqeen +L+k++ e
  XP_008239493.1  93 SDNENEELRRSIDNLDRRLKNLAGEELDMLGMQELKQLERQLKTGVERIRSQIGRVVSENISSLKRKHKALQEENSRLQKRFHE 176
                     568999*************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.478161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-31277IPR002100Transcription factor, MADS-box
CDDcd002653.09E-38271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.53490180IPR002487Transcription factor, K-box
PfamPF014869.2E-1994174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIILSP SGKIYQFASH  60
DINRTIAMYR NQVSLPESNN SSFRRPTTMK FGSDNENEEL RRSIDNLDRR LKNLAGEELD  120
MLGMQELKQL ERQLKTGVER IRSQIGRVVS ENISSLKRKH KALQEENSRL QKRFHELHCA  180
DHASSRILGP NAYMQFFPSE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
6bz1_A2e-21169169MEF2 CHIMERA
6bz1_B2e-21169169MEF2 CHIMERA
6bz1_C2e-21169169MEF2 CHIMERA
6bz1_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239493.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239493.11e-147PREDICTED: agamous-like MADS-box protein AGL19
TrEMBLA0A251P8P11e-129A0A251P8P1_PRUPE; Uncharacterized protein
STRINGXP_008239493.11e-146(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-45AGAMOUS-like 20