PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239542.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 343aa    MW: 38186.8 Da    PI: 7.1977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239542.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08174221455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  XP_008239542.1 174 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 221
                     8*************************9....55599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16168236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-10168225No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16170235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAFSYHPAF LLDSIFLPYT PNNINIDDHF PPSYPSEPLI QEVHNTDSRA VESSCTVDHS  60
SAKVSLSDNE PSVTKKQSTE SSTVVDKLET GEQVTQKVTS MDKKRKNRNG SSLNSAQSKA  120
SREHKGKKQK KLDGAEKAEE KKAKSDKKDQ VKVGDEPPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KMLQRLVPGC DKVTGRAVML DEIINYVQSL QNQVEFLSMK LASVNPLFYD  240
LGMDLGALMV KPERLSSMAS PYPSVPQCSP TQPTAFADTS TNITTFSTAN NYPFLDGSAS  300
ILLQQGQRLN DFSQDSESLM WDVEDQRQNF LNPSGFGNNF QLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239542.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408788e-78EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239542.10.0PREDICTED: transcription factor bHLH137 isoform X2
TrEMBLM5WMI50.0M5WMI5_PRUPE; Uncharacterized protein
STRINGEMJ104830.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-57bHLH family protein