PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239617.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 602aa    MW: 66393.1 Da    PI: 5.8753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239617.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14311221100
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+       s++l lp kfa +   ++   +++ +led+ g +Wev +  ++  g+  l++GW+ F  +++Lk g+f++F ++ +s f  vv
  XP_008239617.1  31 FFKVM--IGDRFSKLLFLPPKFAPTVsALV---NQKAVLEDSLGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLIFNYITSSHF--VV 116
                     67777..444555679*******9996555...347***************..9999999**************************98999..** PP

                     EEE-SS CS
              B3  95 kvfrks 100
                     k+++ks
  XP_008239617.1 117 KIYDKS 122
                     **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1824124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2125124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40729122IPR003340B3 DNA binding domain
CDDcd100178.19E-1630120No hitNo description
PfamPF023621.0E-1231121IPR003340B3 DNA binding domain
SMARTSM010194.2E-931122IPR003340B3 DNA binding domain
PROSITE profilePS508639.361507602IPR003340B3 DNA binding domain
SMARTSM010190.63511598IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-10517587IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-8522589IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-7534585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ  60
KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFVVKIYD  120
KSGCEKLNFP EAINQKKRTR DNRNYTFKAG PSHTIDRSSM KKRDSRTSVV YGSDADIGHR  180
LHETNDTGKA LIVTENASTR DNSNERSKLN PKEAYIEEMI CMFDRDVGDK QEEDRTYIFD  240
LSDFEMLKKN SGTGGSNEVT AMDETCTDHD DSLLRLRNGA GPVDKNPVAK GAVTTAIPMD  300
ETCSDHDDSL LRLINEAGSV DKSPVAKEAV TAAIPSDASK FEGSRINNSS ETKVQNTASP  360
SHEGLCFCQT SGHLFPKAAL KPEENENISN ISNRAINKCL TADGSESLSG NEVVISGKEH  420
DLIDDSCQSA NKKISEISES FDKMMKAIKI ESVELTSDPC SQKIIPQING ESVKVVNPVG  480
SKISNLIGTE NDSAVPVVKS EPVDPVITLP ISSSFSCQEL PMRLPIRMTY RGRPKTDRRV  540
VYLRDPVMRL WPVLYIERNY FKTLASGWEA FSKANNIQPG DECVIGIENG VEGICPVQII  600
SK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239617.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
TrEMBLA0A251P9190.0A0A251P919_PRUPE; Uncharacterized protein
STRINGXP_008239617.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-11B3 family protein