PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239639.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 337aa    MW: 37814.9 Da    PI: 5.3743
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239639.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.21.7e-2138132185
        trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt++e+ +Lie+++ +e+++++g+            +p+W+ vs+++++rg++r+p+qC+++w+nl  ++kki+++e++ +  ++s +++ +++
  XP_008239639.1  38 RWTRHETFVLIEGKKVVENAVQKGRsrsssalgsdHFEPKWDLVSSYCKQRGVSREPVQCRKRWSNLLVDFKKIRNWESQIKGAAESFWVMRNDV 132
                     8*********************986666777777688*******************************************988888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-529106IPR009057Homeodomain-like
PROSITE profilePS500906.71331105IPR017877Myb-like domain
PfamPF138371.3E-1137128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MALDSNKHEG ASSTTPDQVD RQQVPNGSSD DRAKRHPRWT RHETFVLIEG KKVVENAVQK  60
GRSRSSSALG SDHFEPKWDL VSSYCKQRGV SREPVQCRKR WSNLLVDFKK IRNWESQIKG  120
AAESFWVMRN DVRKERKLPG FFDREVYNIL DGNAVTATAA CPLALFIPVQ TDAQSGDGAE  180
EAAAEEEEEE PGKAANGLQQ DMAEDGLCSD SEESEHEETE SKKENLMQDS PATTVTTPMP  240
SSGTIKDKRG LDSNTCGEHI TQEKRKQRRL AIDGCEDNYS DQLIRVLERN NALLNAQLEA  300
RNINCHLDRE QRKEQSNSFL AAISKVTDAL VRIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269EKRKQRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239639.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A251P8F20.0A0A251P8F2_PRUPE; Uncharacterized protein
STRINGXP_008239639.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-75Trihelix family protein