PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239640.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 151aa MW: 17681.9 Da PI: 10.8898

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239640.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.8	2.5e-22	38	132	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt++e+ +Lie+++ +e+++++g+ +p+W+ vs+++++rg++r+p+qC+++w+nl ++kki+++e++ + ++s +++ +++ XP_008239640.1 38 RWTRHETFVLIEGKKVVENAVQKGRsrsssalgsdHFEPKWDLVSSYCKQRGVSREPVQCRKRWSNLLVDFKKIRNWESQIKGAAESFWVMRNDV 132 8*******************986666777777688*****************************************988888888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-6	29	106	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.713	31	105	IPR017877	Myb-like domain
SuperFamily	SSF46689	8.38E-5	32	114	IPR009057	Homeodomain-like
Pfam	PF13837	2.0E-12	37	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MALDSNKHEG ASSTTPDQVD RQQVPNGSSD DRAKRHPRWT RHETFVLIEG KKVVENAVQK 60 GRSRSSSALG SDHFEPKWDL VSSYCKQRGV SREPVQCRKR WSNLLVDFKK IRNWESQIKG 120 AAESFWVMRN DVRKERKLPG FFDREVRWVR K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239640.1	1e-108	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	3e-50	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A251P8F2	1e-101	A0A251P8F2_PRUPE; Uncharacterized protein
STRING	XP_008239640.1	1e-107	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-52	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]