PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239875.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 442aa    MW: 47308.2 Da    PI: 9.2771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239875.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045155174221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C  C+ s+s+k+n++ Hi 
  XP_008239875.1 155 RCDVCNISCSSKENYEAHIL 174
                     6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-9151185No hitNo description
SMARTSM004511.2E-4151185IPR003604Zinc finger, U1-type
SMARTSM003550.48154178IPR015880Zinc finger, C2H2-like
PfamPF128743.0E-7155178No hitNo description
SuperFamilySSF576678.14E-8239271No hitNo description
SMARTSM004510.027240274IPR003604Zinc finger, U1-type
SMARTSM003550.68243267IPR015880Zinc finger, C2H2-like
PfamPF128744.1E-8245267No hitNo description
SuperFamilySSF576679.53E-10302338No hitNo description
SMARTSM004512.4E-5303337IPR003604Zinc finger, U1-type
SMARTSM0035581306330IPR015880Zinc finger, C2H2-like
PfamPF128742.9E-7307330No hitNo description
SMARTSM004515.9E-5392426IPR003604Zinc finger, U1-type
SuperFamilySSF576671.85E-8394425No hitNo description
SMARTSM003554.6395419IPR015880Zinc finger, C2H2-like
PfamPF128745.3E-8396419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRANPTPSST NHATIPSYTN PNSNFTTKSH SQMFNPSQDS TNFTYHIPYQ SNTINPNSNQ  60
RWLFPPPVVP SAVAFDPALR QPGTEPNANS GSYSWTHVVF HAQTPFGEDP NAGSQNGAIQ  120
QAEPIGHEAS IKSLNESLLV PTTSNSLWNS NGTNRCDVCN ISCSSKENYE AHILGKKHQK  180
KIRMQYNPTA TASNVLNNIS LPSQTSSVGG QVIFGGSGVA AGAELETKRR KIVNGGAAVD  240
SMVVCTICNV VCNSQEVYIK HLAGKRHKAQ ASLVAPNVGP YFGAVQSEVT GIWSKDPNKI  300
KLVQSAWCEV CKVNCNSNDT YIKHLVGKKH KKNLEQLEKL KNDGSASTSN VPSAATNAII  360
GPMENPVAKG SQPEEDLETK KRKIISGGAA AGAVRTCTVC NVVCNSQTVF SSHLAGQKHA  420
AMVKKRAEVG VAIRACQQIT AS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239875.10.0PREDICTED: zinc finger RNA-binding protein
TrEMBLA0A251PB320.0A0A251PB32_PRUPE; Uncharacterized protein
STRINGXP_008239875.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF891133