PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239990.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 336aa MW: 38637.6 Da PI: 4.6893

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239990.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	167	217	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl XP_008239990.1 167 SKMLSRETISNYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLASL 217 57899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	148	237	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	170	217	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGGHSLMSWL ANYDVVEDPF CFTNQIVPPM DYLSGMNGYG PFDWQYERTL PLVQDSFLDA 60 VPFMDQSCLN IDPLYSSLDI QPIRSAFQGD ELVLGNGNWV CNDLFGELIE PSNNQQKQIQ 120 HQPPLLMCKN EENGSTENEL EETKVISKRS HLSTRLRSSN STSLNSSKML SRETISNYFY 180 MPITQAAKEL NVGLTLLKKR CRELGIRRWP HRKLASLQTL IRNIQDLGKE GEESEEKLRN 240 AIELLERERK LLEEVPDMQL EDNTKRLRQA CFKANYKKRK IMGMNNLDQS QSSFICSNNE 300 IHEYASIMDD GYEEDEEIKS LLSDSFSSSN SNICLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239990.1	0.0	PREDICTED: protein RKD1
TrEMBL	A0A315A7S8	0.0	A0A315A7S8_PRUYE; Protein RKD1
STRING	XP_008239990.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-40	RWP-RK domain-containing protein