PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240080.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29263 Da    PI: 8.4545
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240080.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_008240080.1  9 KRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box106.23.8e-35771743100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++  +++++ + s++ e+akLk+++e Lqr++ h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk
  XP_008240080.1  77 EKQLLANDNESTGSWTLEHAKLKARVEVLQRNHSHFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKK 171
                     4555567788899********************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_008240080.1 172 VKE 174
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.254161IPR002100Transcription factor, MADS-box
CDDcd002659.47E-42279No hitNo description
SuperFamilySSF554552.22E-33289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.65888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMERILERY ERYSYSEKQL LANDNESTGS WTLEHAKLKA RVEVLQRNHS HFMGEDLQSL  120
SLKELQNLEQ QLDSALKHIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK KVKEKEKALA  180
PQAQSWEQQV QNQGLDCSST LLPEALQSLN FGSGSNYQGI RSDGFGGDHE DENETPTANR  240
PNTLLPPWML RHLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21174173Myocyte-specific enhancer factor 2B
1tqe_R2e-21174173Myocyte-specific enhancer factor 2B
1tqe_S2e-21174173Myocyte-specific enhancer factor 2B
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
6c9l_A2e-21174173Myocyte-specific enhancer factor 2B
6c9l_B2e-21174173Myocyte-specific enhancer factor 2B
6c9l_C2e-21174173Myocyte-specific enhancer factor 2B
6c9l_D2e-21174173Myocyte-specific enhancer factor 2B
6c9l_E2e-21174173Myocyte-specific enhancer factor 2B
6c9l_F2e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0769760.0AM076976.1 Prunus persica mRNA for putative MADS box protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240080.10.0PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ424291e-117AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ3ZU970.0Q3ZU97_PRUPE; Putative MADS box protein
STRINGXP_008240080.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-99AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]