PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240175.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 190aa MW: 21534.2 Da PI: 8.9936

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240175.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l ++++++G g+W++I+ g++R++k+c++rw +yl XP_008240175.1 13 KGAWSKQEDEKLTQYIQKHGEGSWRSIPLAAGLHRCGKSCRLRWVNYL 60 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_008240175.1 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.229	8	60	IPR017930	Myb domain
SMART	SM00717	2.3E-14	12	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.19E-30	12	107	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	6.93E-11	15	60	No hit	No description
PROSITE profile	PS51294	26.459	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-26	63	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-16	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.13E-12	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MRKPCCEKKK TNKGAWSKQE DEKLTQYIQK HGEGSWRSIP LAAGLHRCGK SCRLRWVNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LKRKLIQMGV 120 DPNNHRIGHN FGNTKSFGSR INTNDQPSEN SHSDDPLLDS TSEPESNTSC SALPDLNLDL 180 TIGLPISLGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-28	12	115	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240175.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB434547	2e-40	AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240175.1	1e-140	PREDICTED: myb-related protein 308-like
Swissprot	P81393	4e-74	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M5WAU5	1e-136	M5WAU5_PRUPE; Uncharacterized protein
STRING	XP_008240175.1	1e-139	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	9e-75	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]