PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240182.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 1033aa    MW: 117417 Da    PI: 7.712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240182.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.51.9e-10418462246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+ Ed+ l+++v++ G ++W  Ia  +g++Rt+ qc  r+q 
   XP_008240182.1 418 KSWTAKEDKNLLHLVQEKGIDNWFNIAVLLGTNRTPFQCLARYQR 462
                      58*****************************************96 PP
2Myb_DNA-binding43.95.7e-14471514246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT++Ed +l  av+ lG g+W ++a+ +  gRt+ qc +rw k
   XP_008240182.1 471 REWTKDEDARLRSAVEALGEGDWQSVASALE-GRTGSQCSNRWKK 514
                      68*****************************.***********98 PP
3Myb_DNA-binding445.2e-14524567246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grWT+eEd+ll+ a  ++G+++W++ a+ ++ gRt  qc++r+ +
   XP_008240182.1 524 GRWTPEEDKLLKVAQMLFGPKNWNKTAQFVP-GRTQAQCRDRYVN 567
                      8******************************.***********77 PP
4Myb_DNA-binding35.22.9e-11576619247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g W +eEd +l  a++++G   W+++a++++ +Rt+++c  rw  +
   XP_008240182.1 576 GEWIEEEDSRLRVAIAEYGYC-WSKVAACVP-RRTDNMCWRRWKVL 619
                      6799***************99.*********.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.61312411IPR017877Myb-like domain
SMARTSM007170.0012316413IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-9319335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-9384424IPR009057Homeodomain-like
SuperFamilySSF466894.21E-16394461IPR009057Homeodomain-like
PROSITE profilePS5129410.039412464IPR017930Myb domain
SMARTSM007176.3E-10416466IPR001005SANT/Myb domain
PfamPF002494.0E-9418462IPR001005SANT/Myb domain
CDDcd001671.26E-7419464No hitNo description
Gene3DG3DSA:1.10.10.606.0E-13425471IPR009057Homeodomain-like
SuperFamilySSF466896.17E-19446521IPR009057Homeodomain-like
PROSITE profilePS5129421.563465520IPR017930Myb domain
SMARTSM007171.0E-13469518IPR001005SANT/Myb domain
PfamPF002491.7E-12471514IPR001005SANT/Myb domain
CDDcd001679.95E-11472516No hitNo description
Gene3DG3DSA:1.10.10.604.7E-17472522IPR009057Homeodomain-like
SuperFamilySSF466898.46E-23520616IPR009057Homeodomain-like
PROSITE profilePS5129410.106521569IPR017930Myb domain
SMARTSM007171.2E-12522571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-18524576IPR009057Homeodomain-like
PfamPF002494.4E-13524567IPR001005SANT/Myb domain
CDDcd001676.79E-11525569No hitNo description
PROSITE profilePS5129419.299570624IPR017930Myb domain
SMARTSM007172.5E-7574622IPR001005SANT/Myb domain
PfamPF002495.8E-10576618IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-14577618IPR009057Homeodomain-like
CDDcd001678.33E-8577620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MSPLTESEED QFSGGDREEE EEEDDDEDFD EDMEAIRRAC MLTGTNPDDL NPNNNNQGGD  60
DLRHSSGSES ESESDEVDDD IELLQKIRSR FSNISDFCEP LSLKPLSSLP PAVSDDEEDD  120
YQTLLSVQKR FAAYQNDTCK PVKETCNEIA HESSQVTEDA CMAIHPLSDN AEGQPSASIE  180
LQQSDSCRPS TLPAKYSTFP KSAQVFMDAI KKNRSSQKFL RSKLVQMEAK IEENRKLKER  240
VKILKDFQVS CKKRTGEALS QKKDPRVQLI LVNRPRKFRD LKAHDKKISA MFYGPEENSH  300
VANYRMTLTK FLHSLDRKKW SKAEKKALEK GIRQQFQEMV LQFSVHESSY SERPYGDSNH  360
IDDILASIKD LEITPEKIRE FLPKVNWEQL ASMYIVGRSG GECEARWLNW EDPLINHKSW  420
TAKEDKNLLH LVQEKGIDNW FNIAVLLGTN RTPFQCLARY QRSLNASILK REWTKDEDAR  480
LRSAVEALGE GDWQSVASAL EGRTGSQCSN RWKKSLHPTR KREGRWTPEE DKLLKVAQML  540
FGPKNWNKTA QFVPGRTQAQ CRDRYVNSLE PSLKWGEWIE EEDSRLRVAI AEYGYCWSKV  600
AACVPRRTDN MCWRRWKVLF PDEVSLLKEE KRIRKTALMC NFVDRETERP ALGPNDFRPP  660
IVTSTKTLTY SRKQKGKLSK VSKKIRSRRQ RNNSQSCSKV SEIDNFDKVE TCAGHDASNM  720
KNKVRKQRRI RHKGTEPTGE CQVVVTLPCE QDTHKEPREM SCSDQIVGTS DGDDTTLACF  780
LRNKSKKRKL GPVPSINGKK KRKLVASDSA VQECPANGIQ KGSEVHPEMD EVCDGNQIVS  840
FRKDDEFMVH CDDRISDRMP PCSVQCSHLN GNIMASDNEP DGLKLVSGWK AGLQEPVGKV  900
VGIDPESDGD TDDFVLASLR KKKLKKRHPQ TAKSCPHSCP PSGVTTRSEP LPKRVDQSND  960
RSQVPFVAVG NEPGAVDIGK QHGVDHCETV KEIVNIGAEG DHEAGDTTLA RFLQNKSNNR  1020
QRQSRRGDNR KPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-263866106155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-263866106155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1780788LRNKSKKRK
2786802KRKLGPVPSINGKKKRK
3798803KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240182.10.0PREDICTED: uncharacterized protein LOC103338723
TrEMBLM5WEG40.0M5WEG4_PRUPE; Uncharacterized protein
STRINGXP_008240182.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1