PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240204.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 648aa    MW: 71891.8 Da    PI: 7.2005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240204.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094404771954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_008240204.1 440 FEHflHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVR 477
                     554459******************************88 PP
2BELL108.73.6e-35309377472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e ++kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  XP_008240204.1 309 ESRRKKSRLISMLDEVYRRYKQYYQQMQAVVTSFEYVAGLGNAAPYANLAIKAMTRHFKCLKNAITDQL 377
                     7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.4E-53237375IPR006563POX domain
PfamPF075261.2E-39242374IPR006563POX domain
PROSITE profilePS5007112.179418481IPR001356Homeobox domain
CDDcd000863.49E-13421482No hitNo description
SMARTSM003891.1E-10421485IPR001356Homeobox domain
SuperFamilySSF466896.42E-17423487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27424485IPR009057Homeodomain-like
PfamPF059201.2E-18438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRREKLR VLAGQAHPGC LQPDSPPPPH HHLHPGNCAA SGFLPLPYDP  60
SSSFISSSDL LTCEPTPASP VKPEGQVHHH HHHHPLMGFV SNSSSSSSAS TFRNHLNYLD  120
PQPSSINFPI NPTSIHDINA NPFLYPPQNL QTLRDFDHQA DYGHDQVVVF KPEPLSLSLS  180
SSQPPHHHTH QNNNNNNLQR YGASAVNYSS LNSGVNVASA SNENIGSRSS VPLGPFTGYA  240
SILKGSRFLK PAQQLLEEFC DVGNREIYTA KVLADSSSFF DPPSIESFSP THVVDDDDDP  300
LSVGGDGGES RRKKSRLISM LDEVYRRYKQ YYQQMQAVVT SFEYVAGLGN AAPYANLAIK  360
AMTRHFKCLK NAITDQLQFR NRDATQLSHG KDESQMLRNT RGFYNQRSIH NSDFVEHQPV  420
WRPQRGLPER AVTVLRAWLF EHFLHPYPTD SDKLMLAKQT GLSRSQVSNW FINARVRLWK  480
PMVEEIHTLE TRQVQKTSQR GDQSANRSID DHLPSPNSLA SENPSTTTHR VQDSLSKRTR  540
NELPDHITMG SSTDQLNLSC NNLPSHMHVG HVGMNMAGGS SSGVSLTLGL HQNNGIGLSE  600
PFPINAAQRF GIGLDGNNDG YAMGGFESQN RHFGRDVMGG QLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15427485563Homeobox protein Meis2
3k2a_B1e-15427485563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240204.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-117BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLM5W7S40.0M5W7S4_PRUPE; Uncharacterized protein
STRINGXP_008240204.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-91TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]