PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240396.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 205aa    MW: 22264.3 Da    PI: 7.6106
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240396.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.82.6e-281163358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    + +Y+eCl+NhAaslG++a+DGCgEf+ +   ++++ +l+CaACgCHRnFHRr + 
  XP_008240396.1 11 NEVYRECLRNHAASLGSYATDGCGEFTLD---DASPGGLQCAACGCHRNFHRRVTY 63
                    678*************************8...6689*****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-231362IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-231460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.9021461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-171460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.73E-15115185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-27119186IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-27129186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEGDHHDQDT NEVYRECLRN HAASLGSYAT DGCGEFTLDD ASPGGLQCAA CGCHRNFHRR  60
VTYAATSSQA AGGSGRSSGH HHHNRVIMSS SSRGRDPGDN TIATQDQLMD YNAGGGGSPD  120
SGDRMGGEKR VRTKVTAEQK EKMLAFAEKL GWKLQRKDLE DEIERFCRSI GVSRQVFKVW  180
MHNHKNLSSS STSASTGNAS SLTTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-211291911879ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240396.11e-153PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A314UWY91e-125A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRINGXP_008240396.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-38homeobox protein 22