PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240581.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 466aa MW: 50635.1 Da PI: 7.4103

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240581.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	117	176	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ XP_008240581.1 117 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHL 176 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	109	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	118	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MYVKAKAISF CGDMSETESR SNKNINDIKL FGRTIPLLQT QIEAITCKNS QGSCSELTKA 60 EADGPCAENS VQAGTSAICK EEEKSRMQVN EARVNAKTNS KQAENRILEQ EEDFQKPDKV 120 LPCPRCNSLD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRSVPVGAGR RKNKHLASQY 180 HQIIVSADGV PSTRLETTDS INHQLLSCSK SSSTFGLPDR AGTVLKFGHE APLCESMDTV 240 VNLRDPRTCV EIGSVSGRES GDEPSCVSSV TACGNQGSEL SKNILQRDGI GLQESCSEPN 300 ISHPLNYYPV APLVFPWNPG WRNAASPVAP QHSQSICVQN CMAPNQVQWY PTPVLAVPGP 360 CPQSIPLQTV PALYWGCMPV CPAGMGNLLL SGSNGCLSPS SSTSNSCCSG NGSPTLGKHS 420 RDSNIMDEEK SENRVLVPKP LRVDDPDEAS KSPIWASLGI KRDLKT

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MYVKAKAISF CGDMSETESR SNKNINDIKL FGRTIPLLQT QIEAITCKNS QGSCSELTKA  60
EADGPCAENS VQAGTSAICK EEEKSRMQVN EARVNAKTNS KQAENRILEQ EEDFQKPDKV  120
LPCPRCNSLD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRSVPVGAGR RKNKHLASQY  180
HQIIVSADGV PSTRLETTDS INHQLLSCSK SSSTFGLPDR AGTVLKFGHE APLCESMDTV  240
VNLRDPRTCV EIGSVSGRES GDEPSCVSSV TACGNQGSEL SKNILQRDGI GLQESCSEPN  300
ISHPLNYYPV APLVFPWNPG WRNAASPVAP QHSQSICVQN CMAPNQVQWY PTPVLAVPGP  360
CPQSIPLQTV PALYWGCMPV CPAGMGNLLL SGSNGCLSPS SSTSNSCCSG NGSPTLGKHS  420
RDSNIMDEEK SENRVLVPKP LRVDDPDEAS KSPIWASLGI KRDLKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240581.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253543	0.0	AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240581.1	0.0	PREDICTED: cyclic dof factor 2-like isoform X2
TrEMBL	A0A251N524	0.0	A0A251N524_PRUPE; Uncharacterized protein
STRING	XP_008240580.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-54	cycling DOF factor 2