PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240644.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 733aa    MW: 83546.3 Da    PI: 8.8065
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240644.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22.1e-2160145188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     kfYn+YA+++GFs+r+s+ +k  ++g+  +r fvC  egkre +k+  ++ + +raetr+gC a++k++ + ++k++v+++++eHnH 
  XP_008240644.1  60 KFYNAYAYNIGFSIRRSSFHKF-KSGQLRDRLFVCFAEGKREIDKHV-SNVKYHRAETRCGCLARMKISCHLNEKYRVIEFVSEHNHV 145
                     6*****************9999.6777****************9888.89999**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1760145IPR004330FAR1 DNA binding domain
PfamPF105513.0E-25225311IPR018289MULE transposase domain
PROSITE profilePS509669.619497533IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-5508535IPR006564Zinc finger, PMZ-type
PfamPF044347.7E-5510531IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MEDGEGETST GLNISKGESN EKSSQAMKGN EKIDLVHSSI RKQLIPVIGM EFETEDLAFK  60
FYNAYAYNIG FSIRRSSFHK FKSGQLRDRL FVCFAEGKRE IDKHVSNVKY HRAETRCGCL  120
ARMKISCHLN EKYRVIEFVS EHNHVTTSPS KTHFFNSHRK ITLAQIAEVD MADSSGIAPK  180
ASLEFLSRQA GGRESLGFIP DDYKNYLHSK RTREMKLGDT GGVLKKNKEG RPFAMFVGVN  240
HHKQTIIFGT ALLYDETIQT FTWLFDTFVK AMSGKKPKSI LTDQDAAMSA ALALKWLETS  300
HRLCIWHIYQ NAAKHLSGVF EKFKDFSKDF SSCIYDYEDE DDFLNAWNNM LEKYTLVGND  360
WLSRLFKIRE KWALVYGRQT FCADITTTQR SESMNSCIKK YVSYKYDLLR FFQHFQRLVE  420
DRRYEELKAE FKASQSSPTL SFTVEILKHE ANVYTLKVFK VFQDELCKTY DCALHFIDEM  480
GTIGKYEVIP YGKNWQHIVT FDSTNNVTLC SCKKFEFAGI LCAHALKILS TRNVKSIPAQ  540
YILKRWTKNV KAMSAKINSS SSKNDPKTFD EVDACLKEKS SQETSEVISP VINSRSELNE  600
CINIDDDIIK VRGIKIKERV VGSSKRPKNA LEKLAKKRRT RKTELPNSSS VDSICVPTTK  660
AAPAPLSEFS QELVDVNNLN MEFPVSMVNL LQAQSPLEGE FGLFSSQFTS IGTKSSSVEV  720
DPPFSIDKSH QAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240644.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5Y1930.0M5Y193_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008240644.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-97FAR1-related sequence 5