PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240681.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 171aa MW: 20100.9 Da PI: 8.7993

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240681.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.9e-17	12	53	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n++ r+ tf kR++ i KKA ELS LCd++v++ii+ ++ XP_008240681.1 12 IPNEIARKMTFRKRKKCIYKKADELSKLCDIDVCLIIYEADQ 53 889**********************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.222	2	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-9	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-9	4	24	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-17	4	85	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.53E-16	4	49	No hit	No description
Pfam	PF00319	7.3E-16	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-9	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-9	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MPPRARRSLE LIPNEIARKM TFRKRKKCIY KKADELSKLC DIDVCLIIYE ADQKKGRAIQ 60 SETWPQDSAE FNRIFNKYKA SKDIHIPGLK QNFDLSDFFN TTKKEDVDQK FENLYPTWDD 120 RIDEFSQVEL IKLIGSLEAK IQASSKKIDS MEQNRNVSKA EEHRTNQVPD Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	26	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240681.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240681.1	1e-124	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A314UT73	3e-84	A0A314UT73_PRUYE; Agamous-like MADS-box protein AGL82
STRING	XP_008240681.1	1e-123	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14708	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	7e-20	M-type_MADS family protein