PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240689.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 25317.6 Da    PI: 6.781
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240689.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.8e-142341244
                    HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44
                    tf kR++ i KKA ELS LC+++v++i++  ++
  XP_008240689.1  2 TFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 34
                    9***************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.04143IPR002100Transcription factor, MADS-box
CDDcd001209.81E-12230No hitNo description
SuperFamilySSF554551.57E-12266IPR002100Transcription factor, MADS-box
PfamPF003196.8E-13235IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTFRKRKKSI YKKADELSKL CGIDVCLIVY EADQKKGRAV QPETWPRDPT QFKRILNKYK  60
DSKDTSTPGL KRNFDMSDFY EDKKDHVDED DEKFQNLGKK IFEEEYPTKF QNLGKKISDE  120
EYPTWDNRID DFSQDELTKL IASLESKIQV ATKKIDSMER YMGFNKKQNQ CFVREDTNHD  180
EQPTYQVPGL MSPPSLVHCP MLPSAWVSRS EFEKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
137RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240689.11e-160PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A251N6361e-138A0A251N636_PRUPE; Uncharacterized protein
STRINGXP_008240689.11e-159(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-19M-type_MADS family protein