PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240714.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 416aa    MW: 48705.1 Da    PI: 7.6905
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240714.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.6e-2184174190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fY++YA  +GFs+r+s+ ++s + g ++ r++vCskeg+r+++  +  +  r++r+etr +C+a++ vk    ++ + vtk+++eH+H l+
  XP_008240714.2  84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWMNrYDMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFVKEHSHRLT 174
                     5********************9.8999****************988845677889*****************999**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-1984174IPR004330FAR1 DNA binding domain
PfamPF105515.2E-13308354IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYAKASKTNG IQGQNSVPNS EGYFAEAESL EETENVPSLQ ILDSRTEEST EKSRQFEYDG  60
LNFQNMSIAD LVEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE  120
GSRSKKWMNR YDMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVKEHS HRLTNSREVP  180
FLRSHRYVTE SNIAQSMSMR KASIKTNRTY DYMVDQASGY MKVGFTSKDL YNMIDFERRQ  240
VVLDGDAQAA ISYMNAKAIA DLECFCMFSV DEENRLANLF WRDSQSLHDY YCFGDVVIFD  300
STYKTNVLKT FLTSIKDKKP VSIVMDRDEA MRVAIDEVFP DAHHRLCTWH IMRNVNTNVN  360
NPEIVREFSY CVHGGLTPVA FEQYWQQMID TYDLKGDWIE MMYRKRKRWA EAYCSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240714.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240714.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WPE00.0M5WPE0_PRUPE; Uncharacterized protein
STRINGEMJ156370.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-46FAR1-related sequence 5