PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240866.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 809aa    MW: 91313.9 Da    PI: 4.7766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240866.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07746800146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      + +WT eE+e l+++v+    +      Wk I +  g      Rt+ ++k++w++
   XP_008240866.2 746 KVPWTVEEEEMLKKGVETVSRNdegniPWKQILEFGGsvflHSRTPIDLKDKWRN 800
                      579*****************99********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.9E-4501543IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500906.946741802IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-10743807IPR009057Homeodomain-like
SuperFamilySSF466891.56E-10743803IPR009057Homeodomain-like
SMARTSM007178.3E-7745804IPR001005SANT/Myb domain
CDDcd116602.48E-12747803No hitNo description
PfamPF139217.6E-6749808No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MEDENRSSIN DSDDWHINSK KMKQDGSYVL RSTEQNQLPL HGKACLEDSS ERERCNLAGN  60
HMGMMEEETV LEDGHDDTAS NRSGQSSSDA IHKSQSKNHL NATSMPEETL WDEAHQDSCV  120
GQAEDDGGLH PKPRTSGVAP PDGTQLNVSA KVFNCNSEHD FHIKAPHPAS ADGSQENSIA  180
EDGKDLAREN LADGNRNRVI HSDDCYVMAK RMKWDASYVL QSIEQNQIPL HGRELLEDSS  240
ERDVPLSGRE RCDLAENQIR MMDGGKVIED DHDYHTASKR CGQSTDNAVH KSQSENPCNE  300
TSMTQGTFQD GAPQYTYVDE AKDDGGLHPE LRASCVAVPD ETQHKVSAEV FNCNSEQDFH  360
IEVPHPTSTD EPRQKSIAYE DKDDREQCPE TRISDTAPLG ETQHKDSAKE SDSNSEHDSR  420
IEIACPASAD GSQQKSIPDE AKELLDWLRH YESETLTDND GFHDEKIDVA MKKHAFLSSQ  480
CTSSHRSSVK ADWTERNLGK KSNESDQLLI CKTSDCPVVV HENWLRSSAI HYEKGNFYCP  540
FCIYSLDLTE YLEAKKETSL LKKDLDAFIH TLEHQPKECL GRPNNKENFC MRNFDEDLNE  600
KSHQNGHLGE REENLGKQYE EHANEVNDFQ FQNITGDEQH VAPFASRVDV NSECGDESAT  660
AVCRKLDVSA GKKEEEEKVA QECIPVGVPL SSKNTENLLI DQGYEVNFDS EQVDNQKSST  720
SKYSIRPRRS KIPYSFPATP QLRRIKVPWT VEEEEMLKKG VETVSRNDEG NIPWKQILEF  780
GGSVFLHSRT PIDLKDKWRN ICRRRSKSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240866.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535630.0FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19.
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240866.20.0PREDICTED: uncharacterized protein LOC103339362
TrEMBLA0A314YAY50.0A0A314YAY5_PRUYE; Uncharacterized protein
STRINGEMJ033880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-07MYB_related family protein