PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240883.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 292aa    MW: 33535.7 Da    PI: 9.5784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240883.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.7e-171699294
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    fkvl       s+rl++p  f+++ +g    + + tl+d++g  W+v l  + +++r+++ +GW++Fvk++ L+   ++vF +dg+s+f   v
  XP_008240883.1 16 FKVL--VG-DFSQRLCIPPAFMDHVNGR--LPPKCTLRDPRGDCWTVCL--EVRGDRFFFHEGWQRFVKDHSLEIANVLVFDYDGKSKF--DV 99
                    5555..33.34568********777555..55679**************..*********************************98888..55 PP
2B360.23.6e-19186279799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++  ++ rl +pk+ a + g++  +++ +++ed++g sW+vkl+    + ++gr ++tkGW+e ++an++  gD++vF+l++ +++ +++++fr
  XP_008240883.1 186 RAMKKNRYRLNIPKELAVAKGLI--RKTSVRVEDPNGISWDVKLRLdekEHNGGRLLMTKGWSECCQANNISLGDTMVFELVNVMRGGMKMHIFR 278
                     556677889************99..5557***************99877777778***************************999999*****99 PP

                     S CS
              B3  99 k 99 
                      
  XP_008240883.1 279 G 279
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-239103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-2211104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.02812105IPR003340B3 DNA binding domain
CDDcd100171.03E-1713103No hitNo description
PfamPF023623.1E-141597IPR003340B3 DNA binding domain
SMARTSM010195.5E-1415105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17178279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16178279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929180280IPR003340B3 DNA binding domain
CDDcd100172.80E-15183278No hitNo description
SMARTSM010194.8E-12184280IPR003340B3 DNA binding domain
PfamPF023621.0E-16187279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRKPTKPSL KIPSFFKVLV GDFSQRLCIP PAFMDHVNGR LPPKCTLRDP RGDCWTVCLE  60
VRGDRFFFHE GWQRFVKDHS LEIANVLVFD YDGKSKFDVE LYDPIGSEKE LEPAKKRRGN  120
QARVNEEIIE LDTEEPDEDS EEDARMSNIR KRKSLKSGKR IARTDGGKET PNAPILFRSK  180
HLCFIRAMKK NRYRLNIPKE LAVAKGLIRK TSVRVEDPNG ISWDVKLRLD EKEHNGGRLL  240
MTKGWSECCQ ANNISLGDTM VFELVNVMRG GMKMHIFRGN SYVVLDASCV KY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535631e-160FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240883.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLM5VQI50.0M5VQI5_PRUPE; Uncharacterized protein
STRINGXP_008240883.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein