PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241076.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YA

Protein Properties

Length: 321aa MW: 35232.6 Da PI: 9.5978

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241076.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.6	2.8e-30	154	209	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ e++ ++ rkpy+heSRh hA+rRpRg+gGrF XP_008241076.1 154 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-AALRKPYMHESRHLHAMRRPRGCGGRF 209 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-33	151	212	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.907	152	212	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-26	155	209	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	155	177	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	186	209	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MAMQTVYFKE HEGITNPMGQ LSSALSGPWW SAFGSQPSYG ESCGHSKPFT MEHPSSGDQL 60 TATKLTGRGT EQGLDKGNTN QFTIFPGDGQ KSQAAISLQS SPQKYRARFE LGFGQPMICA 120 KYPYMDQCYG LFSTYGPQIS GRIMLPLNLT ADEGPIYVNA KQYHGIIRRR QSRAKAVMEN 180 RAAALRKPYM HESRHLHAMR RPRGCGGRFL NTKTMNNGKN GTEGTQVGDG QLFRHSGSHS 240 SELLQSESGT LNSSKETNGS SSNISGSEVT SVYSRRELDR FSINHLGPSV HSLSDMMDSV 300 RGMVIPTKWV AAGDNCCNLK I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-16	153	210	2	60	HAPB protein
4g92_A	2e-16	153	210	2	60	HAPB protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241076.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10
Refseq	XP_016651667.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBL	A0A251N943	0.0	A0A251N943_PRUPE; Uncharacterized protein
STRING	XP_008241076.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	4e-63	nuclear factor Y, subunit A10